SeRC Affiliated Researchers

PositionCommunitiesMCPsProjects

Abbas Cheddad

Senior Lecturer at BTH

Adam Peplinski

PhD, Application Expert - Computational Fluid DynamicsFLOWSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Parallel Implementation of the Setup of an Algebraic Multigrid Solver, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Refactoring of Nek5000, Sessi MCP: Investigation of Communication Kernel in Nek5000

Agatha de Boer

Associate ProfessorClimate Modeling

Ahmed Hemani

Brain-ITMCP Brain-IT: Implementing models in hardware

Alessandra Villa

PhDMolecular SimulationMolecular: Algorithms for molecular dynamics on heterogeneous architectures

Alexander Ploner

PhD, Senior Researchere-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models

Alexander Lyubartsev

ProfessorMolecular Simulation

Ali Gholami

Parallel Software and Data Engineeringe-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Alok Juneja

PhD

Amin Rasam

PhDFLOW: Development of subgrid models and application of large-eddy simulations

Anders Engström

PhDClimate: Ensemble single-column model system

Anders Karlström

Brain-IT

Anders Persson

Associate ProfessorVisualizationVisualization: Efficient Methods for Volumetric Illumination, Visualization: Clinically Applied Multivariate Volume Rendering

Anders Szepessy

Professor in MathematicsNumerical AnalysisNumerical Analysis: Coarse graining of stochastic differential equations with application to wireless channel modeling, Numerical Analysis: Adaptive multilevel Monte Carlo simulation, Numerical Analysis: Calibration in mathematical finance, Numerical Analysis: Adaptive methods for subsurface flow, Numerical Analysis: Quadratic hedging, Numerical Analysis: Numerical methods for molecular dynamics

Andreas Carlson

Andrei Kramer

PostdocBrain-ITMCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models

Andrew Frampton

PhDClimate Modeling

Anna-Karin Tornberg

ProfessorFLOW, Numerical AnalysisNumerical Analysis: A fast summation method for fiber simulations, Numerical Analysis: Numerical treatment of surfactants in multiphase flow, Numerical Analysis: Fast Ewald summation for Stokesian particle suspensions, Numerical Analysis: An accurate integral equation method for simulating multi-phase Stokes flow, FLOW and NA: Quadrature rules for boundary integral methods applied to Stokes flow, FLOW: Numerical treatment of surfactants in multiphase flow, FLOW: An accurate integral equation method for simulating multi-phase Stokes flow, Molecular: Spectrally accurate fast Ewald summation, Numerical Analysis: Multiscale methods in fluid dynamics, Numerical Analysis: Spectrally accurate fast Ewald summation

Annica Ekman

Associate ProfessorClimate Modeling

Antti Koskela

Post-docNumerical Analysis

Arne Johansson

ProfessorFLOWFLOW: Rotating channel flow at high Reynolds number, FLOW: Simulation and modelling of turbulent combustion, FLOW: Development of subgrid models and application of large-eddy simulations, FLOW: DNS of high-Reynolds number turbulent pipe flow, FLOW: Arctic Sea ice in warm climates

Arul Murugan

PhDElectronic Structure

Arvind Kumar

Assistant ProfessorBrain-IT

Atsuto Maki

Brain-IT

Bengt Persson

ProfessorBioinformatics, NSCBioinformatics: Development of automated protein family classification using hidden Markov models for functional characterization of proteins, Bioinformatics: High throughput prediction of disease caused by SNPs

Bengt Sennblad

Associate ProfessorBioinformatics

Bernhard Thiele

Parallel Software and Data Engineering

Björn Engquist

ProfessorNumerical AnalysisNumerical Analysis: Computational electromagnetics in complex environments

Bogdan Frecus

PhDElectronic: Multiscale Modeling Methods for Biomolecules

Chandan Basu

PhD, Application Expert - Computational ScienceClimate Modeling, NSC, Parallel Software and Data Engineering

Chiara Sorgentone

Numerical Analysis

Christopher Peters

Associate ProfessorVisualization

Ciarán O´Reilly

PhDFLOWFLOW: Numerical simulation of generation of sound in separated internal flows

Claudio Mirabello

Bioinformatics

Colin Jones

PhD

Daniel Klevebring

e-Science for Cancer Prevention and Control

David Gomez-Cabrero

PhDParallel Software and Data EngineeringPSDE: E-Science in Medicine – Prediction, Prognosis, and Understanding of Complex Diseases

Elias Jarlebring

PhDNumerical AnalysisNumerical Analysis: Iterative methods for nonlinear eigenvalue problems

Emma Ivansson

PhD, Postdoc, leader of eCPC work package bioinformaticse-Science for Cancer Prevention and Control

Enrico Deusebio

PhDFLOW: Stratified wall-bounded flows

Erik Fransén

Brain-IT

Erik Granseth

Erik Lehto

PhDNumerical AnalysisNumerical Analysis: Radial basis function methods for partial differential equations

Erik Lindborg

Associate ProfessorFLOWFLOW: Simulations of quasi-geostrophic turbulence, FLOW: Stratified wall-bounded flows

Erik Sonnhammer

ProfessorBioinformaticsBioinformatics: Inferring functional coupling of proteins using next gen sequencing data

Evelyn Otero

FLOWSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Overcoming I/O limitations on exascale architectures, Sessi MCP: OpenACC for Nek5000

Fabian Schreiber

Faris Gelmukhanov

ProfessorElectronic Structure

Florent Di Meo

Electronic Structure

Francesco Pausata

Climate Modeling

Fredrik Wiklund

PhDe-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP4: Cancer systems biology

Gabriele Messori

Climate Modeling

Gaetano Sardina

PhDFLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Particle-laden transitional flows; small and finite-size particles, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops

Gautier Berthou

Parallel Software and Data Engineering

Gedeminas Kairaitis

Electronic Structure

Geert Brethouwer

PhDFLOWFLOW: Rotating channel flow at high Reynolds number, FLOW: Simulation and modelling of turbulent combustion, FLOW: Development of subgrid models and application of large-eddy simulations, FLOW: DNS of high-Reynolds number turbulent pipe flow, FLOW: Stratified wall-bounded flows

George El Khoury

PhD

Giampiero Salvi

Brain-IT

Glib Barishinikov

Electronic Structure

Gordon Ball

PostdocParallel Software and Data Engineering

Gunilla Efraimsson

Associate ProfessorFLOWFLOW: Numerical simulation of generation of sound in separated internal flows

Gustav Taxén

Haichun Liu

Electronic Structure

Hamish Struthers

PhD, Application ExpertClimate ModelingClimate: Treating multiple sea-ice categories in EC-EARTH

Hanna Härdin

PhD

Hans Knutsson

ProfessorVisualizationVisualization: Visualization of MR Diffusion Data

Hans Ågren

ProfessorElectronic StructureElectronic: Nucleation, stability and light-absorption of pollutant particles in the atmosphere and its climate implications

Hatef Darabi

MCP eCPC: eCPC WP3: Cancer microsimulation

Hector Zenil

Postdoctoral FellowParallel Software and Data Engineering

Henric Zazzi

PhD, Application ExpertBioinformatics

Holger Kohr

ResearcherNA: Reconstruction methods for very noisy Electron Tomography data

Imad Abugessaisa

PhDPSDE: E-Science in Medicine – Prediction, Prognosis, and Understanding of Complex Diseases

Jaime Axel Rosal Sandberg

Electronic StructureElectronic: Exploitation of heterogeneous processor-coprocessor (CPU/CCPU) environments for high level ab initio electronic structure calculations

Jan Nordström

ProfessorFLOWFLOW: Constructing non-reflecting boundaries using multiple Penalty terms

Jan-Eric Litton

ProfessorData Management, Parallel Software and Data Engineeringe-Science for Cancer Prevention and ControlPSDE: Biobanking and biomedical research integration toward a global sharing of biobank resources

Jenny Brandefelt

PhDFLOW: Arctic Sea ice in warm climates

Jens Carlsson

Assistant ProfessorMolecular: Computational studies of membrane protein-ligand interactions

Jesper Oppelstrup

ProfessorNumerical AnalysisNumerical Analysis: Multiscale methods in fluid dynamics

Jing Gong

PhD, Application Expert - Computational Fluid DynamicsFLOWSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Parallel Implementation of the Setup of an Algebraic Multigrid Solver, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Refactoring of Nek5000, Sessi MCP: OpenACC for Nek5000

Joanna Kauczor

Electronic Structure

Joel Hedlund

PhD, Application Expert - BioinformaticsBioinformaticsBioinformatics: Development of automated protein family classification using hidden Markov models for functional characterization of proteins

Johan Hellsvik

Electronic Structure

Johan Hoffman

ProfessorNumerical AnalysisNumerical Analysis: FEniCS-HPC, FLOW: Parallel adaptive FEM, FLOW: Numerical methods for fluid-structure interaction aero-acoustics

Johan Malm

FLOWFLOW: Spectral-element simulations of turbulent separation, FLOW: Large-scale simulations of turbulent flows, including transition and separation

Johan Raber

PhD, Application Expert - Computational ChemistryElectronic Structure, NSC

Jonas Carlsson

Jonas Lantz

Post-docFLOW, VisualizationVisualization: Assimilation of experimental and computational fluid dynamics

Jonathan Vincent

PhD, Application Expert - Parallel ProgrammingApplication Experts, PDC

Jorrit Boekel

PhD StudentBioinformatics

Joy Merwin

Climate Modeling

Julien Savre

PhD

Katarina Gustavsson

PhDFLOW, Numerical AnalysisNumerical Analysis: A fast summation method for fiber simulations

Katerina Vrotsou

PhDVisualizationVisualization: POrtable Diary Data Collector

Klaus Wyser

PhDClimate ModelingClimate: Treating multiple sea-ice categories in EC-EARTH

Kristofer Döös

ProfessorClimate Modeling

Lars Bergqvist

Associate Professor, Electronic Structure Community CoordinatorElectronic StructureElectronic: Atomistic spin dynamics

Lars Kjelldahl

Associate ProfessorVisualization

Laszlo Fuchs

ProfessorFLOW

Laurent Brodeau

PhD, Researcher & Scientific Programmer

Lennart Nilsson

ProfessorMolecular SimulationMolecular: Algorithms for molecular dynamics on heterogeneous architectures

Leonid Pourovskii

PhDElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications

Liang Wei

PhD

Liangchao Zou

Post-docClimate Modeling, FLOW

Lilit Axner

Application Expert - Computational Fluid Dynamics

Lisa Prahl Wittberg

PhDFLOW

Luca Brandt

Professor in Fluid MechanicsFLOWFLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Adjoint-based linear and nonlinear optimisation in wall-bounded shear flow, FLOW: Numerical simulation of swimming micro-organisms in suspensions, FLOW: Particle-laden transitional flows; small and finite-size particles, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops, FLOW: Methods for Lagrangian particles in complex geometries

Lukas Käll

Associate ProfessorBioinformaticsBioinformatics: Computational optimization of mass spectrometry-based proteomics experiments

Marco Kupiainen

PhDFLOW

Marcus Ekholm

PhD, Post-docElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications

Marina Kasimova

Molecular Simulation

Mario Romero

Associate ProfessorVisualizationVisualization: Supporting collaborative view transformations of simulation-based data

Mark Abraham

GROMACS development managerMolecular SimulationSeRC Exascale Simulation Software Initiative - SESSISessi MCP: An optimized FFT library for 3D real-valued small-size data

Martin Eklund

PhDe-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models, MCP eCPC: eCPC WP3: Cancer microsimulation

Martin Falk

Postdoctoral ResearcherVisualization

Mathieu Linares

PhDElectronic StructureVisualization: Organic solar cells design, Electronic: QMMM in the complex TDDFT representation, Electronic: Morphology and electro-optical properties of materials in solar cell

Mats Brorsson

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: ENCORE, PSDE: OpCoReS - Optimized Component Runtime System

Matthew de Stadler

PhD, Postdoctoral Researcher

Matthew Studham

PhD, Postdoctoral ResearcherBioinformatics

Mattias Chevalier

PhD, ScaniaFLOWFLOW: Wall-bounded turbulence: Re-visit using numerical experiments, FLOW: Tools for Visualisations with Simson

Mattias Sandberg

PhDNumerical AnalysisNumerical Analysis: Adaptive methods for subsurface flow, Numerical Analysis: Numerical methods for molecular dynamics

Mauricio Esguerra

Postdoctoral FellowMolecular Simulation

Maya Alsheh Ali

e-Science for Cancer Prevention and Control

Michael Hanke

Associate ProfessorNumerical AnalysisNumerical Analysis: Computational modeling of the mammalian cell, MCP Brain-IT: Multiscale modeling using the MUSIC tool

Michael Tjernström

ProfessorClimate Modeling

Michele Visciarelli

PostdocElectronic Structure

Mikael Djurfeldt

PhD, Application Expert - NeuroinformaticsBrain-ITMCP Brain-IT: Multiscale modeling using the MUSIC tool

Mikhail Dzugutov

ProfessorMolecular SimulationNumerical Analysis: Numerical methods for molecular dynamics

Milos Ilak

FLOW: Tools for Visualisations with Simson, FLOW: Bifurcation and stability analysis of a jet in crossflow

Minh Do-Quang

Associate Professor, ResearcherFLOWFLOW: Simulation of free-boundary problems and phase change, FLOW: Numerical simulation of swimming micro-organisms in suspensions

Monica Leu

PhD

Mårten Ahlquist

Associate ProfessorElectronic Structure

Mårten Björkman

Brain-IT

Nina Kirchner

PhDClimate Modeling

Oana Marin

Numerical Analysis: A fast summation method for fiber simulations, FLOW and NA: Quadrature rules for boundary integral methods applied to Stokes flow, Sessi MCP: Parallel Implementation of the Setup of an Algebraic Multigrid Solver, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Runtime Profiling and Automatisation of Projections, Sessi MCP: Overcoming I/O limitations on exascale architectures

Olav Vahtras

ProfessorElectronic Structure

Olivia Eriksson

PhD, SeRC Coordinator and ResearcherBrain-ITMCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia, MCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models

Olle Edholm

ProfessorMolecular Simulation

Olof Emanuelsson

Associate ProfessorBioinformaticsBioinformatics: Computational methods to assess and remedy mapping bias in allele-specific expression and genomic cis-element analysis

Omar Guiterrez Arenas

PhDMCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia

Ozan Öktem

PhDNumerical AnalysisNA: Reconstruction methods for very noisy Electron Tomography data

Parul Tewatia

Brain-IT

Patric Ljung

Visualization

Patrik Björkholm

Pavel Bessarab

PostdocElectronic Structure

Pawel Herman

Brain-IT

Per Larsson

Peter Somogyi

PhDMCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Peter Fritzson

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: OPENPROD, PSDE: OpCoReS - Optimized Component Runtime System

Peter Larsson

Application Expert - Computational Material Science

Peter Steneteg

PhD, Post-docElectronic StructureVisual Data Analytics in e-Science ApplicationsElectronic: Visualization tool for electronic structure calculations

Petras Kundrotas

Bioinformatics

Pär Sparén

ProfessorParallel Software and Data Engineering

Qiang Li

PhDClimate ModelingFLOW: Simulations of turbulent boundary layers with passive scalars

Qiong Zhang

Senior lecturer in paleoclimate modelingClimate Modeling

Radovan Bast

PhDElectronic Structure

Ralf Döscher

Science Coordinator at Rossby Centre/SMHI; chair of the SG of EC-EarthClimate Modeling

Rashid Valiev

Electronic Structure

Ricardo Vinuesa

PostdocFLOWSessi MCP: Overcoming I/O limitations on exascale architectures

Rikard Ojala

PhDNumerical Analysis: An accurate integral equation method for simulating multi-phase Stokes flow, FLOW: An accurate integral equation method for simulating multi-phase Stokes flow

Roland Nilsson

PhDParallel Software and Data Engineering

Rossen Apostolov

PhD, Application Expert - Molecular DynamicsMolecular Simulation, PDCSeRC Exascale Simulation Software Initiative - SESSI

Rune Graversen

PhD

Sander Pronk

Molecular: Markov state models for simulation, Molecular: Distributed computing simulation, Molecular: Efficient free energy calculations for biomolecular applications

Sara Light

PhDBioinformatics

Sara Zahedi

PhDNumerical AnalysisNumerical Analysis: Cut finite element methods

Seif Haridi

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: Vision Cloud, PSDE: Big Data Tools for Social Science

Shervin Bagheri

PhDFLOWFLOW: Bifurcation and stability analysis of a jet in crossflow

Shriram Srinivasan

Numerical Analysis

Sikander Hayat

Post-doc researcherBioinformatics: Using predictions to improve predictions of membrane proteins

Soon-Heum “Jeff” Ko

Application Expert - Computational Fluid Dynamics

Stefan Ivanell

Associate ProfessorFLOW

Stefan Wallin

PhDFLOWFLOW: Rotating channel flow at high Reynolds number

Sven Stafström

ProfessorElectronic StructureElectronic: Method development in studies of charge transport in organic materials

Thor Wikfeldt

Electronic Structure

Tino Ebbers

Professor, Medical Visualization Subcommunity CoordinatorVisualizationVisualization: Lagrangian Analysis of Intracardiac Blood Flow using 4D Flow MRI, Visualization: Semi-Automatic Visualization and Quantification of Intra-Cardiac 4D Flow MRI Data for Large Patient Studies, Visualization: Cardiovascular blood flow analysis, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations, Visualization: Assimilation of experimental and computational fluid dynamics

Tom Whitington

e-Science for Cancer Prevention and Control

Tony Lindeberg

Brain-IT

Torben Brömstrup

Postdoctoral Researcher

Torben Koenigk

PhD, Climate ResearcherClimate ModelingClimate: Treating multiple sea-ice categories in EC-EARTH

Torben Rasmussen

PhD, Application Expert - Computational ChemistryElectronic Structure, NSC

Usman Dastgeer

PhD

Walter Basile

PhDBioinformatics

Wei Zhang

Weine Olovsson

PhD, Application Expert - Computational Material ScienceElectronic Structure

Yi Luo

Professor in Theoretical ChemistryElectronic Structure

Ying Liu

Climate Modeling

Yvonne Kallberg

Örjan Ekeberg

Professor in Computer ScienceBrain-IT

Özge Yoluk