Faculty

PositionCommunitiesMCPsProjects

Anders Ynnerman

ProfessorVisualizationCollaborative Visual Exploration and PresentationVisualization: Efficient Methods for Volumetric Illumination, Visualization: OpenSpace – A tool for Space Research and Communication, Visualization: Interactive 3D Histology Visualization for Pathology, Visualization: Multi-scale visualization of binding processes related to conformational changes of proteins for Alzheimer’s disease research, Visualization: Uncertainty Visualization, Visualization: Clinically Applied Multivariate Volume Rendering, Visualization: A Signal Processing Approach to Direct Volume Rendering, Visualization: Methods for High-Quality Illumination in Interactive Volume Rendering, Visualization: POrtable Diary Data Collector

Anna Delin

ProfessorElectronic StructureElectronic: Spin molecular electronics, Electronic: Thermoelectric materials, Electronic: Method development for calculation of transport and magnetic properties

Arne Elofsson

ProfessorBioinformaticsBioinformatics: Using predictions to improve predictions of membrane proteins, Bioinformatics: Deep learning in protein structure predictions

Berk Hess

Associate Professor, Molecular Simulation Community CoordinatorMolecular SimulationSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Low-Overhead Thread-Parallelization Library, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Algorithms for molecular dynamics on heterogeneous architectures, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Molecular: Algorithms for molecular dynamics on heterogeneous architectures, Molecular: Efficient free energy calculations for biomolecular applications, Molecular: Molecular processes at the three-phase contact line, Molecular: Parallel sampling of functional motions in proteins, Molecular: Spectrally accurate fast Ewald summation, Numerical Analysis: Spectrally accurate fast Ewald summation

Björn Wallner

Associate Professor in BioinformaticsBioinformaticsBioinformatics: Using machine learning potentials in conformational sampling and selection of protein structures

Christoph Kessler

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: PEPPHER, PSDE: OpCoReS - Optimized Component Runtime System

Dan Henningson

Professor, SeRC DirectorFLOWSeRC Exascale Simulation Software Initiative - SESSIFLOW: Spectral-element simulations of turbulent separation, FLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Tools for Visualisations with Simson, FLOW: Bifurcation and stability analysis of a jet in crossflow, FLOW: Studies of transition in Couette flow, FLOW: Adjoint-based linear and nonlinear optimisation in wall-bounded shear flow, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, FLOW: Numerical experiments in a virtual wind tunnel

Elias Jarlebring

PhDNumerical AnalysisNumerical Analysis: Iterative methods for nonlinear eigenvalue problems

Erik Lindahl

ProfessorMolecular SimulationSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Molecular: Markov state models for simulation, Molecular: Distributed computing simulation, Molecular: Efficient free energy calculations for biomolecular applications

Erwin Laure

Professor in Computer ScienceParallel Software and Data Engineering, PDCBrain-IT, SeRC Exascale Simulation Software Initiative - SESSIPSDE: ScalaLife, PSDE: PRACE, PSDE: EGI-Inspire, PSDE: Venus-C, PSDE: CRESTA, Sessi MCP: Overcoming I/O limitations on exascale architectures, PSDE: OpCoReS - Optimized Component Runtime System, MCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Gunilla Svensson

ProfessorClimate ModelingClimate: Ensemble single-column model system, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models

Hedvig Kjellström

ProfessorParallel Software and Data Engineering

Igor Abrikosov

ProfessorElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications, Electronic: Visualization tool for electronic structure calculations

Ingrid Hotz

Professor, Visualization Community CoordinatorVisualizationCollaborative Visual Exploration and PresentationVisualization: Cardiovascular blood flow analysis, Visualization: Organic solar cells design, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations

Jeanette Hellgren-Kotaleski

Professor, Brain-IT Community CoordinatorBrain-ITMCP Brain-IT: Multiscale modeling using the MUSIC tool, MCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia, MCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models, MCP Brain-IT: ’Embedding’ - Investigate activation of receptor induced cascades in the context of an active neuronal network

Jim Dowling

Associate Professor, PSDE Community CoordinatorParallel Software and Data Engineeringe-Science for Cancer Prevention and ControlPSDE: Big Data Tools for Social Science, MCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Juni Palmgren

Professore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP3: Cancer microsimulation

Keith Humphreys

Associate Professore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models

Lars Arvestad

Associate Professor, Bioinformatics Community CoordinatorBioinformaticsBioinformatics: Improved scaffolding for genome assembly, Bioinformatics: VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

Lars Bergqvist

Associate Professor, Electronic Structure Community CoordinatorElectronic StructureElectronic: Atomistic spin dynamics

Luca Brandt

Professor in Fluid MechanicsFLOWFLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Adjoint-based linear and nonlinear optimisation in wall-bounded shear flow, FLOW: Numerical simulation of swimming micro-organisms in suspensions, FLOW: Particle-laden transitional flows; small and finite-size particles, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops, FLOW: Methods for Lagrangian particles in complex geometries

Marcus Ekholm

PhD, Post-docElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications

Mark Clements

Associate Professor, eCPC Flagship Coordinatore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models

Mathieu Linares

PhDElectronic StructureVisualization: Organic solar cells design, Electronic: QMMM in the complex TDDFT representation, Electronic: Morphology and electro-optical properties of materials in solar cell

Matts Karlsson

ProfessorFLOWVisualization: Assimilation of experimental and computational fluid dynamics, FLOW: Methods for Lagrangian particles in complex geometries

Olivia Eriksson

PhD, SeRC Coordinator and ResearcherBrain-ITMCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia, MCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models

Olof Runborg

Professor, Numerical Analysis Community CoordinatorNumerical AnalysisNumerical Analysis: Computational electromagnetics in complex environments, Numerical Analysis: Fast interface tracking, Numerical Analysis: Fast methods for high frequency wave propagation problems, Numerical Analysis: Gaussian beam approximations, FLOW and NA: Quadrature rules for boundary integral methods applied to Stokes flow, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models, Numerical Analysis: Multiscale methods in fluid dynamics

Patrick Lambrix

ProfessorParallel Software and Data EngineeringPSDE: Ontology engineering for management and integration of data

Patrick Norman

ProfessorElectronic StructureVisualization: Multi-scale visualization of binding processes related to conformational changes of proteins for Alzheimer’s disease research, Electronic: QMMM in the complex TDDFT representation

Philipp Schlatter

Associate Professor, FLOW Community CoordinatorFLOWSeRC Exascale Simulation Software Initiative - SESSIFLOW: Wall-bounded turbulence: Re-visit using numerical experiments, FLOW: Spectral-element simulations of turbulent separation, FLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Large-scale simulations of turbulent flows, including transition and separation, FLOW: Simulations of turbulent boundary layers with passive scalars, FLOW: Rotating channel flow at high Reynolds number, FLOW: DNS of high-Reynolds number turbulent pipe flow, FLOW: Tools for Visualisations with Simson, FLOW: Stratified wall-bounded flows, FLOW: Bifurcation and stability analysis of a jet in crossflow, FLOW: Studies of transition in Couette flow, FLOW: Particle-laden transitional flows; small and finite-size particles, FLOW: ASTRID - ”A STudy of Rotation In Developing boundary-layer flows": Direct numerical simulations, Sessi MCP: Parallel Implementation of the Setup of an Algebraic Multigrid Solver, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Refactoring of Nek5000, Sessi MCP: Runtime Profiling and Automatisation of Projections, Sessi MCP: Overcoming I/O limitations on exascale architectures, Sessi MCP: OpenACC for Nek5000, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations, FLOW: Methods for Lagrangian particles in complex geometries, FLOW: Numerical experiments in a virtual wind tunnel

Rickard Armiento

Associate professor in Physical ModelingElectronic Structure

Rodrigo Caballero

Professor, Climate Community CoordinatorClimate ModelingClimate: Ensemble single-column model system, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops

Stefano Markidis

Assistant Professor in High Performance ComputingParallel Software and Data EngineeringSeRC Exascale Simulation Software Initiative - SESSISessi MCP: An optimized FFT library for 3D real-valued small-size data, Sessi MCP: Low-Overhead Thread-Parallelization Library, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Refactoring of Nek5000, Sessi MCP: Investigation of Communication Kernel in Nek5000

Tino Weinkauf

ProfessorVisualization

Zilvinas Rinkevicius

PhDElectronic StructureElectronic: Multilayer parallelization of DALTON quantum chemistry program, Electronic: Method development for multiscale computations, Electronic: Exploitation of heterogeneous processor-coprocessor (CPU/CCPU) environments for high level ab initio electronic structure calculations, Electronic: Multiscale Modeling Methods for Biomolecules