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Erik Sonnhammer



2014 Avoiding pitfalls in gene (co)expression meta-analysis
2014 Big data and other challenges in the quest for orthologs
2014 The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
2014 FunCoup 3.0 : database of genome-wide functional coupling networks
2014 Functional association networks as priors for gene regulatory network inference
2014 MaxLink : network-based prioritization of genes tightly linked to a disease seed set
2014 Pfam : the protein families database
2012 Comparative interactomics with Funcoup 2.0
2012 Network Analysis of Functional Genomics Data : Application to Avian Sex-Biased Gene Expression
2012 The Pfam protein families database
2012 Quality criteria for finding genes with high mRNA-protein expression correlation and coexpression correlation
2012 Toward community standards in the quest for orthologs.
2011 Domain architecture conservation in orthologs
2011 Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
2011 OrthoDisease: tracking disease gene orthologs across 100 species
2010 Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity
2010 InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
2010 Network-based Identification of Novel Cancer Genes
2010 Orthology confers intron position conservation
2010 The Pfam protein families database


Year Title
  Inferring functional coupling of proteins using next gen sequencing data