Senior Researchers

PositionCommunitiesMCPsProjects

Aatto Laaksonen

ProfessorMolecular SimulationMolecular: Hierarchical Multiscale Modeling with a new class of force fields, Molecular: Novel approaches for the evaluation of long range electrostatic interactions in MD, Molecular: New state of the art hardware technologies and computational techniques to boost molecular simulations, Molecular: Systematic coarse grained modelling of DNA and proteins using the Newton Inversion method

Agatha de Boer

Associate ProfessorClimate Modeling

Ahmed Hemani

Brain-ITMCP Brain-IT: Implementing models in hardware

Alexander Lyubartsev

ProfessorMolecular Simulation

Anders Karlström

Brain-IT

Anders Lansner

ProfessorParallel Software and Data EngineeringBrain-ITMCP Brain-IT: Implementing models in hardware

Anders Persson

Associate ProfessorVisualizationVisualization: Efficient Methods for Volumetric Illumination, Visualization: Clinically Applied Multivariate Volume Rendering

Anders Szepessy

Professor in MathematicsNumerical AnalysisNumerical Analysis: Coarse graining of stochastic differential equations with application to wireless channel modeling, Numerical Analysis: Adaptive multilevel Monte Carlo simulation, Numerical Analysis: Calibration in mathematical finance, Numerical Analysis: Adaptive methods for subsurface flow, Numerical Analysis: Quadratic hedging, Numerical Analysis: Numerical methods for molecular dynamics

Anders Ynnerman

ProfessorVisualizationCollaborative Visual Exploration and PresentationVisualization: Efficient Methods for Volumetric Illumination, Visualization: OpenSpace – A tool for Space Research and Communication, Visualization: Interactive 3D Histology Visualization for Pathology, Visualization: Multi-scale visualization of binding processes related to conformational changes of proteins for Alzheimer’s disease research, Visualization: Uncertainty Visualization, Visualization: Clinically Applied Multivariate Volume Rendering, Visualization: A Signal Processing Approach to Direct Volume Rendering, Visualization: Methods for High-Quality Illumination in Interactive Volume Rendering, Visualization: POrtable Diary Data Collector

Anna Delin

ProfessorElectronic StructureElectronic: Spin molecular electronics, Electronic: Thermoelectric materials, Electronic: Method development for calculation of transport and magnetic properties

Anna-Karin Tornberg

ProfessorFLOW, Numerical AnalysisNumerical Analysis: A fast summation method for fiber simulations, Numerical Analysis: Numerical treatment of surfactants in multiphase flow, Numerical Analysis: Fast Ewald summation for Stokesian particle suspensions, Numerical Analysis: An accurate integral equation method for simulating multi-phase Stokes flow, FLOW and NA: Quadrature rules for boundary integral methods applied to Stokes flow, FLOW: Numerical treatment of surfactants in multiphase flow, FLOW: An accurate integral equation method for simulating multi-phase Stokes flow, Molecular: Spectrally accurate fast Ewald summation, Numerical Analysis: Multiscale methods in fluid dynamics, Numerical Analysis: Spectrally accurate fast Ewald summation

Annica Ekman

Associate ProfessorClimate Modeling

Arne Elofsson

ProfessorBioinformaticsBioinformatics: Using predictions to improve predictions of membrane proteins, Bioinformatics: Deep learning in protein structure predictions

Arne Johansson

ProfessorFLOWFLOW: Rotating channel flow at high Reynolds number, FLOW: Simulation and modelling of turbulent combustion, FLOW: Development of subgrid models and application of large-eddy simulations, FLOW: DNS of high-Reynolds number turbulent pipe flow, FLOW: Arctic Sea ice in warm climates

Atsuto Maki

Brain-IT

Bengt Persson

ProfessorBioinformatics, NSCBioinformatics: Development of automated protein family classification using hidden Markov models for functional characterization of proteins, Bioinformatics: High throughput prediction of disease caused by SNPs

Berk Hess

Associate Professor, Molecular Simulation Community CoordinatorMolecular SimulationSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Low-Overhead Thread-Parallelization Library, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Algorithms for molecular dynamics on heterogeneous architectures, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Molecular: Algorithms for molecular dynamics on heterogeneous architectures, Molecular: Efficient free energy calculations for biomolecular applications, Molecular: Molecular processes at the three-phase contact line, Molecular: Parallel sampling of functional motions in proteins, Molecular: Spectrally accurate fast Ewald summation, Numerical Analysis: Spectrally accurate fast Ewald summation

Björn Wallner

Associate Professor in BioinformaticsBioinformaticsBioinformatics: Using machine learning potentials in conformational sampling and selection of protein structures

Björn Engquist

ProfessorNumerical AnalysisNumerical Analysis: Computational electromagnetics in complex environments

Christoph Kessler

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: PEPPHER, PSDE: OpCoReS - Optimized Component Runtime System

Dan Henningson

Professor, SeRC DirectorFLOWSeRC Exascale Simulation Software Initiative - SESSIFLOW: Spectral-element simulations of turbulent separation, FLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Tools for Visualisations with Simson, FLOW: Bifurcation and stability analysis of a jet in crossflow, FLOW: Studies of transition in Couette flow, FLOW: Adjoint-based linear and nonlinear optimisation in wall-bounded shear flow, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, FLOW: Numerical experiments in a virtual wind tunnel

Erik Fransén

Brain-IT

Erik Lindahl

ProfessorMolecular SimulationSeRC Exascale Simulation Software Initiative - SESSISessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Molecular: Markov state models for simulation, Molecular: Distributed computing simulation, Molecular: Efficient free energy calculations for biomolecular applications

Erik Lindborg

Associate ProfessorFLOWFLOW: Simulations of quasi-geostrophic turbulence, FLOW: Stratified wall-bounded flows

Erik Sonnhammer

ProfessorBioinformaticsBioinformatics: Inferring functional coupling of proteins using next gen sequencing data

Erwin Laure

Professor in Computer ScienceParallel Software and Data Engineering, PDCBrain-IT, SeRC Exascale Simulation Software Initiative - SESSIPSDE: ScalaLife, PSDE: PRACE, PSDE: EGI-Inspire, PSDE: Venus-C, PSDE: CRESTA, Sessi MCP: Overcoming I/O limitations on exascale architectures, PSDE: OpCoReS - Optimized Component Runtime System, MCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Faris Gelmukhanov

ProfessorElectronic Structure

Giampiero Salvi

Brain-IT

Gunilla Efraimsson

Associate ProfessorFLOWFLOW: Numerical simulation of generation of sound in separated internal flows

Gunilla Svensson

ProfessorClimate ModelingClimate: Ensemble single-column model system, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models

Gustav Amberg

ProfessorFLOW: Simulation of free-boundary problems and phase change, FLOW: Numerical simulation of swimming micro-organisms in suspensions, Molecular: Molecular processes at the three-phase contact line

Hans Knutsson

ProfessorVisualizationVisualization: Visualization of MR Diffusion Data

Hans Ågren

ProfessorElectronic StructureElectronic: Nucleation, stability and light-absorption of pollutant particles in the atmosphere and its climate implications

Hedvig Kjellström

ProfessorParallel Software and Data Engineering

Igor Abrikosov

ProfessorElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications, Electronic: Visualization tool for electronic structure calculations

Ingrid Hotz

Professor, Visualization Community CoordinatorVisualizationCollaborative Visual Exploration and PresentationVisualization: Cardiovascular blood flow analysis, Visualization: Organic solar cells design, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations

Jan Nordström

ProfessorFLOWFLOW: Constructing non-reflecting boundaries using multiple Penalty terms

Jan-Eric Litton

ProfessorData Management, Parallel Software and Data Engineeringe-Science for Cancer Prevention and ControlPSDE: Biobanking and biomedical research integration toward a global sharing of biobank resources

Jeanette Hellgren-Kotaleski

Professor, Brain-IT Community CoordinatorBrain-ITMCP Brain-IT: Multiscale modeling using the MUSIC tool, MCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia, MCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models, MCP Brain-IT: ’Embedding’ - Investigate activation of receptor induced cascades in the context of an active neuronal network

Jesper Oppelstrup

ProfessorNumerical AnalysisNumerical Analysis: Multiscale methods in fluid dynamics

Jim Dowling

Associate Professor, PSDE Community CoordinatorParallel Software and Data Engineeringe-Science for Cancer Prevention and ControlPSDE: Big Data Tools for Social Science, MCP eCPC: eCPC WP2: Managing sensitive data in distributed environments

Johan Hoffman

ProfessorNumerical AnalysisNumerical Analysis: FEniCS-HPC, FLOW: Parallel adaptive FEM, FLOW: Numerical methods for fluid-structure interaction aero-acoustics

Juni Palmgren

Professore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP3: Cancer microsimulation

Keith Humphreys

Associate Professore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models

Kristofer Döös

ProfessorClimate Modeling

Lars Arvestad

Associate Professor, Bioinformatics Community CoordinatorBioinformaticsBioinformatics: Improved scaffolding for genome assembly, Bioinformatics: VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

Lars Bergqvist

Associate Professor, Electronic Structure Community CoordinatorElectronic StructureElectronic: Atomistic spin dynamics

Lars Kjelldahl

Associate ProfessorVisualization

Laszlo FuchsSenior Researchers,

ProfessorFLOW

Lennart Nilsson

ProfessorMolecular SimulationMolecular: Algorithms for molecular dynamics on heterogeneous architectures

Luca Brandt

Professor in Fluid MechanicsFLOWFLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Adjoint-based linear and nonlinear optimisation in wall-bounded shear flow, FLOW: Numerical simulation of swimming micro-organisms in suspensions, FLOW: Particle-laden transitional flows; small and finite-size particles, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops, FLOW: Methods for Lagrangian particles in complex geometries

Lukas Käll

Associate ProfessorBioinformaticsBioinformatics: Computational optimization of mass spectrometry-based proteomics experiments

Marcus Ekholm

PhD, Post-docElectronic StructureElectronic: Ab initio simulation of strongly correlated materials: methods and applications

Mario Romero

Associate ProfessorVisualizationVisualization: Supporting collaborative view transformations of simulation-based data

Mark Clements

Associate Professor, eCPC Flagship Coordinatore-Science for Cancer Prevention and ControlMCP eCPC: eCPC WP5: Prediction and screening models

Mathieu Linares

PhDElectronic StructureVisualization: Organic solar cells design, Electronic: QMMM in the complex TDDFT representation, Electronic: Morphology and electro-optical properties of materials in solar cell

Mats Brorsson

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: ENCORE, PSDE: OpCoReS - Optimized Component Runtime System

Mats Wallin

ProfessorMolecular Simulation

Mattias Rantalainen

e-Science for Cancer Prevention and Control

Matts Karlsson

ProfessorFLOWVisualization: Assimilation of experimental and computational fluid dynamics, FLOW: Methods for Lagrangian particles in complex geometries

Michael Felsberg

Professor

Michael Hanke

Associate ProfessorNumerical AnalysisNumerical Analysis: Computational modeling of the mammalian cell, MCP Brain-IT: Multiscale modeling using the MUSIC tool

Michael Tjernström

ProfessorClimate Modeling

Mikhail Dzugutov

ProfessorMolecular SimulationNumerical Analysis: Numerical methods for molecular dynamics

Minh Do-Quang

Associate Professor, ResearcherFLOWFLOW: Simulation of free-boundary problems and phase change, FLOW: Numerical simulation of swimming micro-organisms in suspensions

Mårten Ahlquist

Associate ProfessorElectronic Structure

Mårten Björkman

Brain-IT

Olav Vahtras

ProfessorElectronic Structure

Olivia Eriksson

PhD, SeRC Coordinator and ResearcherBrain-ITMCP Brain-IT: Computational modeling of intracellular signaling cascades in the basal ganglia, MCP Brain-IT: Parameter estimation, uncertainty analysis and global sensitivity analysis of intracellular neuronal models

Olle Edholm

ProfessorMolecular Simulation

Olof Emanuelsson

Associate ProfessorBioinformaticsBioinformatics: Computational methods to assess and remedy mapping bias in allele-specific expression and genomic cis-element analysis

Olof Runborg

Professor, Numerical Analysis Community CoordinatorNumerical AnalysisNumerical Analysis: Computational electromagnetics in complex environments, Numerical Analysis: Fast interface tracking, Numerical Analysis: Fast methods for high frequency wave propagation problems, Numerical Analysis: Gaussian beam approximations, FLOW and NA: Quadrature rules for boundary integral methods applied to Stokes flow, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models, Numerical Analysis: Multiscale methods in fluid dynamics

Patrick Lambrix

ProfessorParallel Software and Data EngineeringPSDE: Ontology engineering for management and integration of data

Patrick Norman

ProfessorElectronic StructureVisualization: Multi-scale visualization of binding processes related to conformational changes of proteins for Alzheimer’s disease research, Electronic: QMMM in the complex TDDFT representation

Peter Fransson

ProfessorBrain-ITMCP Brain-IT: Comparative analysis (data/models) of the dynamics of networks

Peter Fritzson

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: OPENPROD, PSDE: OpCoReS - Optimized Component Runtime System

Petras Kundrotas

Bioinformatics

Philipp Schlatter

Associate Professor, FLOW Community CoordinatorFLOWSeRC Exascale Simulation Software Initiative - SESSIFLOW: Wall-bounded turbulence: Re-visit using numerical experiments, FLOW: Spectral-element simulations of turbulent separation, FLOW: WALLPART - Inertial Particles in developing wall turbulence, FLOW: Large-scale simulations of turbulent flows, including transition and separation, FLOW: Simulations of turbulent boundary layers with passive scalars, FLOW: Rotating channel flow at high Reynolds number, FLOW: DNS of high-Reynolds number turbulent pipe flow, FLOW: Tools for Visualisations with Simson, FLOW: Stratified wall-bounded flows, FLOW: Bifurcation and stability analysis of a jet in crossflow, FLOW: Studies of transition in Couette flow, FLOW: Particle-laden transitional flows; small and finite-size particles, FLOW: ASTRID - ”A STudy of Rotation In Developing boundary-layer flows": Direct numerical simulations, Sessi MCP: Parallel Implementation of the Setup of an Algebraic Multigrid Solver, Sessi MCP: Code optimization for on-node performance: SIMD and LIBXSMM for small dense matrix-matrix multiplications, streaming stores for optimizing cache to memory operations, Sessi MCP: Refactoring of Nek5000, Sessi MCP: Runtime Profiling and Automatisation of Projections, Sessi MCP: Overcoming I/O limitations on exascale architectures, Sessi MCP: OpenACC for Nek5000, Sessi MCP: Assembly level vectorization of compute intensive kernels in Nek5000, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations, FLOW: Methods for Lagrangian particles in complex geometries, FLOW: Numerical experiments in a virtual wind tunnel

Pär Sparén

ProfessorParallel Software and Data Engineering

Qiong Zhang

Senior lecturer in paleoclimate modelingClimate Modeling

Rickard Armiento

Associate professor in Physical ModelingElectronic Structure

Rodrigo Caballero

Professor, Climate Community CoordinatorClimate ModelingClimate: Ensemble single-column model system, Climate: Computational issues with interaction between the core and parameterized small-scale processes in climate models, Climate: Direct numerical simulation of cloud turbulence and its interaction with cloud drops

Seif Haridi

Professor in Computer ScienceParallel Software and Data EngineeringPSDE: Vision Cloud, PSDE: Big Data Tools for Social Science

Shervin Bagheri

PhDFLOWFLOW: Bifurcation and stability analysis of a jet in crossflow

Stefan Ivanell

Associate ProfessorFLOW

Sven Stafström

ProfessorElectronic StructureElectronic: Method development in studies of charge transport in organic materials

Timo Ropinski

Professor in Computer ScienceVisualization: Efficient Methods for Volumetric Illumination, Visualization: Volumetric Finite Element Visualization, Visualization: Methods for High-Quality Illumination in Interactive Volume Rendering, Electronic: Visualization tool for electronic structure calculations, Electronic: Morphology and electro-optical properties of materials in solar cell

Tino Ebbers

Professor, Medical Visualization Subcommunity CoordinatorVisualizationVisualization: Lagrangian Analysis of Intracardiac Blood Flow using 4D Flow MRI, Visualization: Semi-Automatic Visualization and Quantification of Intra-Cardiac 4D Flow MRI Data for Large Patient Studies, Visualization: Cardiovascular blood flow analysis, Visualization: FlowZoom: Feature-based, multi-resolution in-situ sampling of very large turbulence simulations, Visualization: Assimilation of experimental and computational fluid dynamics

Tino Weinkauf

ProfessorVisualization

Tony Lindeberg

Brain-IT

Yi Luo

Professor in Theoretical ChemistryElectronic Structure

Yngve Sundblad

Professor

Örjan Ekeberg

Professor in Computer ScienceBrain-IT